Insights about the current OmniPath database contents

Last updated: 16th July 2020. For a log of OmniPath updates see our archive. The previous versions of this page are available here.

Here we will collect the figures generated by the OmniPath2 pipeline, a Python and an R package for the analysis and visualization of OmniPath database contents. Now I am putting here one figure just as an example and will add more later.

Enzyme-substrate interactions

Enzymes by substrate
Number of enzymes acting on one substrate protein. From left to right: cumulative distribution, density function, histogram.
Substrates by enzymes
Number of substrate proteins targeted by one enzyme. From left to right: cumulative distribution, density function, histogram.
Number of PTM sites on substrate proteins
Number of PTM sites on substrate proteins. From left to right: cumulative distribution, density function, histogram.


Dénes Türei, Nicolàs Palacio, Olga Ivanova, Saez Lab 2016-2020. Feedback: omnipathdb@gmail.com

Valid HTML5 Valid CSS3